I assume you used the lates version of FA and not an old copy on your PC.
But from the symtoms I could assume that you new map is corrupted or that some files are missing.
Delete the currentmap.dat in the root and reinstall the map, check if you get any error from Winrar during the unpacking.
Activate the map again using FA.
If no other map is present your TT will start with the new map and should work fine.
Also check your current bootloader, if you still have a 4.X or 5.3xx it might cause problems with the V9 NC's.
If that is the case check the downloaded NC for a file "systemxxxx" where the xxxx represent the version number, rename to just "system" and reboot.